Faculty Scholarship 2017

Biomedical Engineering

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Vinay Abhyankar

Associate Professor
Biomedical Engineering
Kate Gleason College of Engineering

2017 Submissions

Journal Paper

Hasan, Mohammad R., et al. "One-Step Fabrication of Flexible Nanotextured PDMS as a Substrate for Selective Cell Capture." Biomedical Physics & Engineering Express. (2017): 1-11. Web. *

Published Conference Proceedings

Tran, Nhat, et al. "MicroRNA Dysregulational Synergistic Network: Learning Context-Specific MicroRNA Dysregulations in Lung Cancer Subtypes." Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Ed. IEEE. Kansas City, MO: IEEE, 2017. Web. *

Peer Reviewed/Juried Poster Presentation or Conference Paper

Inyang, Edidiong, Vinay V. Abhyankar, and Michael Cho. "Validation of an in vitro TBI Model for Blood Brain Barrier Disruption." Proceedings of the Biomedial Engineering Society Annual Meeting. Ed. BMES. Phoenix, AZ: BMES. £

Almendariz, Cristian, Mohammad R. Hasan, and Vinay V. Abhyankar. "A 3D Printed, Low Cost, High Capacity Bubble Trap for Microfluidic Applications." Proceedings of the Biomedial Engineering Society Annual Meeting. Ed. BMES. Phoenix, AZ: BMES. £

Hasan, Mohammad R., et al. "Flexible Nanotextured PDMS As A Substrate for Selective Cell Capture." Proceedings of the Biomedial Engineering Society Annual Meeting. Ed. BMES. Phoenix, AZ: BMES. £

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Iris Asllani

Research Associate Professor
Biomedical Engineering
Kate Gleason College of Engineering

2017 Submissions

Journal Paper

Marshall, Randolph S., et al. "Altered Cerebral Hemodyamics and Cortical Thinning In Asymptomatic Carotid Artery Stenosis." PLOS One. (2017): 1-14. Print. *

Petr, Jan, et al. "Photon vs. Proton Radiochemotherapy: Effects on Brain Tissue Volume and Perfusion." Radiotherapy and Oncology. (2017): 221-231. Print. *

Published Conference Proceedings

Liao, Justin, et al. "Effect of Brain Extraction of Low Resolution Arterial Spin Labeling (ASL) fMRI Images on Realignment and Coregistration." Proceedings of the Engineering in Medicine and Biology. Ed. IEEE and EMBS. Piscataway, NJ: EMBS, 2017. Print. *

Marshall, Ronald S., et al. "Regional Hypoperfusion is Associated with Cortical Thinning in Asymptomatic Carotid Artery Disease." Proceedings of the International Stroke Conference. Ed. Marc Fisher. Houston, TX: ICS, 2017. Print. *

Petr, Jan, et al. "Perfusion Decrease During Radiochemotherapy is Not Fully Explained by Volumetric Gray Matter Changes." Proceedings of the International Society of Magnetic Resonance in Medicine. Ed. ISMRM. Concord, CA: ISMRM, 2017. Print. *

Chappell, Michael, et al. "Partial Volume Effects in Arterial Spin Labelling: Something to Live with or Correct for?" Proceedings of the International Society for Magnetic Resonance in Medicine. Ed. ISMRM. Concord, CA: ISMRM, 2017. Print. *

Mutsaerts, Henri J. , et al. "Arterial Spin Labeling Spatial Coefficient of Variation Predicts Carotid Occlusion Side." Proceedings of the European Society of Magnetic Resonance in Medicine and Biology. Ed. Patrick Cozzone. Vienna, Austria: ESMRMB, 2017. Print. *

Petr, Jan, et al. "Comparison of Two Methods for Atrophy-Correction in Perfusion Imaging: Partial-Volume Correction Versus Gray-Matter Volume Covariate." Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. Ed. Patrick Cozzone. Vienna, Austria: ESMRMB, 2017. Print. *

Mutsaerts, Henri J., et al. "Perfusion Changes Following Elective Surgery In the Elderly." Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. Ed. Patrick Cozzone. Vienna, Austria: ESMRMB, 2017. Print. *

Mutsaerts, Henri J., et al. "Explore-ASL: Image Processing Toolbox For Multi-Center ASL Population Analyses." Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. Ed. Patrick Cozzone. Vienna, Austria: ESMRMB, 2017. Print. *

Invited Keynote/Presentation

Asllani, Iris. "Clinical Applications of Arterial Spin Labeling Perfusion MRI." Perfusion Imaging in Oncological Research. Institut und Poliklinik fí¼r Diagnostische und Interventionelle Neuroradiologie. Dresden, Germany. 24 Jun. 2017. Lecture.

Asllani, Iris. "High Field ASL: Advantages and Disadvantages." Seminar Series on High Field MRI. University of Amsterdam. Amsterdam, Netherlands. 15 Jul. 2017. Guest Lecture.

Asllani, Iris. "Arterial Spin Labeling perfusion MRI: To PVEc or Not to PVEc?" Radiology Seminar. Imperial College. London, England. 22 Feb. 2017. Guest Lecture.

Asllani, Iris. "Applications of ASL PhysMRI in Aging and Dementia." Clinical Imaging Science Center. University of Brighton-Sussex. Brighton, UK. 21 Nov. 2017. Guest Lecture.

Mutsaerts, Henk-Jan and Iris Asllani. "ASL Spatial CoV Predicts Carotid Occlusion Side." European Society for Magnetic Resonance in Medicine and Biology. ESMRMB. Barcelona, Spain. 17 Oct. 2017. Conference Presentation.

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Steven Day

Professor
Biomedical Engineering
Kate Gleason College of Engineering

2017 Submissions

Journal Paper

Malinauskas, R., et al. "FDA Benchmark Medical Device Flow Models for CFD Validation." ASAIO Journal 63. 2 (2017): 150-160. Print. *

Tchantchaleishvili, Vakhtang, et al. "Clinical Implications of Physiological Flow Adjustment in Continuous-Flow Left Ventricular Assist Devices." ASAIO Journal 63. 3 (2017): 241-250. Print. *

Peer Reviewed/Juried Poster Presentation or Conference Paper

Sul, Bora, et al. "Computational Assessment of Airflow Sensitivity to Healthy and Diseased Lung Conditions." Proceedings of the Biomedical Engineering Society Annual Meeting. Ed. BMES. Phoenix, AZ: BMES. *

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Thomas Gaborski

Professor
Biomedical Engineering
Kate Gleason College of Engineering

2017 Submissions

Journal Paper

Carter, R.N., et al. "Ultrathin Transparent Porous Glass Membranes For Cell Culture." Biofabrication 9. 1 (2017): 1-23. Print. *

Casillo, S.M., et al. "Membrane Pore Spacing Can Modulate Endothelial Cell-Substrate and Cell-Cell Interactions." ACS Biomaterials Science & Engineering 3. 3 (2017): 243-248. Print. *

Ramirez, M.M. and T.R. Gaborski. "Fabrication Techniques Enabling Ultrathin Nanostructured Membranes for Separations." Electrophoresis 28. 19 (2017): 2374-2388. Print. *

Chung, H.H., et al. "Porous Substrates Promote Early Endothelial Migration at the Expense of Fibronectin Fibrillogenesis." ACS Biomaterials Science & Engineering 4. 1 (2018): 222-230. Print. *

Peer Reviewed/Juried Poster Presentation or Conference Paper

Dehghani, M.A. and T.R. Gaborski. "Capture and Release of Extracellular Vesicles on Nanoporous Membranes." Proceedings of the ASME International Conference on Mini Micro and Nanochannels. Ed. ASME. Boston, MA: ASME. *

Chung, H.H., et al. "Porous Substrates Influence Early Endothelial Migration and the Associated Fibronectin Fibrillogenesis." Proceedings of the Biomedical Engineering Society. Ed. BMES. Phoenix, AZ: BMES. *

Casillo, S.M., S.J. Perry, and T.R. Gaborski. "Disrupted Surfaces of Porous Membranes Reduce YAP Nuclear Localization in Adipose-Derived Stem Cells." Proceedings of the Biomedical Engineering Society. Ed. BMES. Phoenix, AZ: BMES. *

Ramirez, M.M., C. Soule, and T.R. Gaborski. "Co-Culture Membranes With Tunable Nanopore Sizes To Selectively Control Cell-Cell Communication." Proceedings of the Biomedical Engineering Society. Ed. BMES. Phoenix, AZ: BMES. *

Ramirez, M.M., et al. "Development of Transparent Ultrathin Membranes Capable of Modulating Cell-Substrate and Cell-Cell Interactions." Proceedings of the Materials Research Society. Ed. MRS. Phoenix, AZ: MRS. *

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Blanca Lapizco-Encinas

Professor
Biomedical Engineering
Kate Gleason College of Engineering

2017 Submissions

Journal Paper

Flanagan, L.A., F.H. Labeed, and B.H. Lapizco-Encinas. "Focus on AES Annual Meeting 2016." Electrophoresis 38. 20 (2017): 2553-2553. Print. *

Lapizco-Encinas, B.H. and Z. El Rassi. "Electro"and Liquid Phase"Separations (ITP 2016)." Electrophoresis 38. 12 (2017): 1537-1537. Print. *

Lapizco-Encinas, B.H. "Dielectrophoresis 2017." Electrophoresis 38. 11 (2017): 1405-1406. Print. *

Saucedo-Espinosa, M.A. and B.H. Lapizco-Encinas. "Exploiting Particle Mutual Interactions To Enable Challenging Dielectrophoretic Processes." Analytical Chemistry 89. 16 (2017): 8459-8467. Print. *

Romero-Creel, M.F., et al. "Assessment of Sub-Micron Particles By Exploiting Charge Differences with Dielectrophoresis." Micromachines 8. 8 (2017): 239-253. Web. *

Journal Editor

Lapizco-Encinas, B.H., ed. Electrophoresis. Germany: Wiley, 2017. Print.

National/International Competition Award Winner

Lapizco-Encinas, B.H. National Science Foundation. Funded Grant: Development of Dielectrophoresis Chromatography Employing Asymmetric Insulating Structures and Electric Fields. Alexandria, VA, 2017. *

Goodrich, Eric and Blanca Lapizco-Encinas. AES Electrophoresis Society. AES Travel Award. Minneapolis, MN, 2017. £

Peer Reviewed/Juried Poster Presentation or Conference Paper

Polniak, D., E. Goodrich, and B.H. Lapizco-Encinas. "Dielectrophoretic Separation of Large Microscale Particles (dp>5 um) By Exploiting Charge Differences." Proceedings of the AlCHE Annual Meeting 2017. Ed. AICHE. Minneapolis, MN: AICHE. £

Goodrich, E., M.F. Romero-Creel, and B.H. Lapizco-Encinas. "Dielectrophoretic Assessment of Sub-Micron Particles By Exploiting Charge Differences." Proceedings of the AICHE Annual Meeting 2017. Ed. AICHE. Minneapolis, MN: AICHE. £

Invited Keynote/Presentation

Lapizco-Encinas, B.H. "Effects of Particle’s Properties On Dielectrophoretic Separations." 24th International Symposium on Electro- and Liquid Phase-Separation Techniques. ITP. Sopot, Poland. 11 Sep. 2017. Keynote Speech.

Lapizco-Encinas, B.H. "Dielectrophoretic Schemes For Particle Manipulation." Artie McFerrin Department of Chemical Engineering. Texas A&M University. College Station, TX. 10 Apr. 2017. Keynote Speech.

Perez-Gonzalez, V.H., R.C. Gallo-Villanueva, and B.H. Lapizco-Encinas. "Obstacle-Density Effects on Particle Trapping in Insulator-Based Dielectrophoresis Systems." AlCHE Annual Meeting 2017. AICHE. Minneapolis, MN. 31 Oct. 2017. Conference Presentation. £

Gallo-Villanueva, R.C., V.H. Perez-Gonzalez, and B.H. Lapizco-Encinas. "Effect of Insulator Post Shape on Joule Heating Effects in Insulator-Based Dielectrophoretic Devices." AICHE Annual Meeting 2017. AICHE. Minneapolis, MN. 1 Nov. 2017. Conference Presentation. £

Saucedo-Espinosa, M.A and B.H. Lapizco-Encinas. "Using Particle-Particle Interactions to Enable Challenging DEP Separations." AICHE Annual Meeting 2017. AICHE. Minneapolis, MN. 31 Oct. 2017. Conference Presentation. £

Wang, T., et al. "Insulator-Based Dielectrophoresis As an Anti-Fouling Strategy for Nanoporous Silicon-Nitride Membrane Filters." 2017 Meeting of the Electrochemical Society. ECS. New Orleans, LA. 31 May 2017. Conference Presentation. £

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Cristian Linte

Associate Professor
Biomedical Engineering
Kate Gleason College of Engineering

2017 Submissions

Journal Paper

Linte, C.A., et al. "Lesion Modeling, Characterization, and Visualization for Image-guided Cardiac Ablation Therapy Monitoring." Journal of Medical Imaging. (2017): 1-16. Print. *

Otani, N.F., et al. "Assessing Cardiac Tissue Function via Action Potential Wave Imaging Using Cardiac Displacement Data." Lect Notes Comput Vision Biomech 27. (2017): 903-912. Print. *

Dangi, S., et al. "A Robust Head CT Image Registration Pipeline for Craniosynostosis Skull Correction Surgery." IET Healthcare Technology Letters 4. 5 (2017): 174-178. Print. «

Dangi, S. and C.A. Linte. "Using Atlas Prior with Graph Cut Techniques For Right Ventricle Segmentation Form Cardiac MRI Images." Lect Notes Comput Sci 10263. (2017): 83-94. Print. «

Published Conference Proceedings

Zikri, Y.K. Ben, S. Mendez, and C.A. Linte. "Anatomical Based Registration of Multi-sector X-ray Images for Long Limb Panorama Generation." Proceedings of the Proc SPIE Medical Imaging: Biomedical Applications in Molecular, Functional and Structural Images. Ed. B. Jimi and A. Krol. Bellingham, WA: SPIE, 2017. Print. *

Jalalahmadi, G., M. Helguera, and C.A. Linte. "A Numerical Finite Element Model to Study the Biomechanical Behavior of Abdominal Aortic Aneurysm." Proceedings of the Proc SPIE Medical Imaging: Biomedical Applications in Molecular, Functional and Structural Images. Ed. B. Jimi and A. Krol. Bellingham, WA: SPIE, 2017. Print. *

Jackson, A., et al. "3D Printing for Orthopedic Applications: From High Resolution Cone Beam CT Images to Life Size Physical Models." Proceedings of the Proc SPIE Medical Imaging: Imaging Informatics for Healthcare, Research and Applications. Ed. T. Cook and J. Zhang. Bellingham, WA: SPIE, 2017. Print. *

Krueger, E., et al. "An Interactive, Stereoscopic Virtual Environment for Medical Imaging Visualization, Simulation and Training." Proceedings of the Proc SPIE Medical Imaging: Image Perception, Observer performance and Technology Assessment. Ed. M. Kupinsky and R. Nishikawa. Bellingham, WA: SPIE, 2017. Print. *

Shontz, S.M., et al. "High-Order Tetrahedral Mesh Generation for Cardiac Simulations." Proceedings of the International Conference on Computational Methods for Coupled Problems in Science and Engineering — Coupled Problems. Ed. M. Papadrakakis, E. Oñate, and B.A. Schrefler. Barcelona, Spain: International Center for Numerical Methods in Engineering (CIMNE), 2017. Print. *

Journal Editor

Linte, C.A. and N. Padoy, ed. Springer's Journal of Computer Assisted Radiology and Surgery - Special Issue on Information Processing for Computer-Assisted Interventions. Heidelberg: Springer-Verlag, 2017. Print. *

Linte, C.A., et al, ed. IET Healthcare Technology Letters Journal - Special Issue on Augmented Environments for Computer-Assisted Interventions. Stevenage: IET, 2017. Print. «

Linte, C.A., ed. IEEE Access. Piscataway: IEEE, 2017. Web. *

Linte, C.A., ed. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. London: Taylor & Francis, 2017. Print. *

Peer Reviewed/Juried Poster Presentation or Conference Paper

Stees, M. "High-Order Tetrahedral Mesh Generation for Cardiac Simulations." Proceedings of the Coupled Problems in Science and Engineering VII. Ed. M. Papadrakakis, E. Oñate, and B. Schrefler. Barcelona, Spain: International Center for Numerical Methods in Engineering (CIMNE).

Krueger, E., et al. "An Interactive, Stereoscopic Virtual Environment For Medical Imaging Visualization, Simulation and Training." Proceedings of the SPIE Medical Imaging: Image Perception, Observer Performance and Technology Assessment. Ed. M. Kupinsky and R. Nishikawa. Bellingham, WA: SPIE.

Jalalahmadi, G., M. Helguera, and C.A. Linte. "A Numerical Finite Element Model to Study the Biomechanical Behavior of Abdominal Aortic Aneurysm." Proceedings of the SPIE Medical Imaging: Biomedical Applications in Molecular, Structural and Functional Imaging. Ed. B. Gimi and A. Krol. Bellingham, WA: SPIE.

Invited Keynote/Presentation

Linte, C.A. "From Medical Image Computing to Computer-Aided Diagnosis: Challenges and Lessons Learned." Warwick Engineering in Biomedicine Initiative. University of Warwick. Coventry, UK. 23 Nov. 2017. Lecture.

Linte, C.A. "Assessing Cardiac Tissue Function via Action Potential Wave Imaging Using Cardiac Displacement Data." Visualization and Image Processing. ECCOMAS. Porto, Portugal. 19 Oct. 2017. Conference Presentation.

Dangi, S. and C.A. Linte. "A Robust Head CT Image Registration Pipeline for Craniosynostosis Skull Correction Surgery." MICCAI Workshp on Augmented Environments for Computer-assisted Interventions. MICCAI. Quebec City, Canada. 10 Sep. 2017. Conference Presentation.

Dangi, S. and C.A. Linte. "Using Atlas Prior with Graph Cut Techniques for Right Ventricle Segmentation Form Cardiac MRI Images." Functional Imaging and Modeling of the Heart (FIMH). Computing in Cardiology. Toronto, Canada. 11 Jun. 2017. Conference Presentation.

Jackson, A. and C.A. Linte. "3D Printing For Orthopedic Applications: From High Resolution Cone Beam CT Images To Life Size Physical Models." SPIE Medial Imaging: Imaging Informatics for Healthcare, Research and Applications. International Society of Optics and Photonics (SPIE). Orlando, FL. 21 Feb. 2017. Conference Presentation.

Zikri, YK Ben and C.A. Linte. "Anatomical Based Registration of Multi-Sector X-Ray Images For Long Limb Panorama Generation." SPIE Medical Imaging: Biomedical Applications in Molecular, Functional and Structural Images. International Society of Optics and Photonics (SPIE). Orlando, FL. 18 Feb. 2017. Conference Presentation.

Dangi, S. and C.A. Linte. "Integrating Atlas and Graph Cut Methods For Right Ventricle Segmentation From Cardiac Cine MRI." SPIE Medial Imaging: Image-guied Procedures, Robotic Interventions and Modeling. International Society of Optics and Photonics (SPIE). Orlando, FL. 19 Feb. 2017. Conference Presentation.

National/International Competition Award Winner

Dangi, S., et al. Rochester Institute of Technology. Best Student Paper Award - MICCAI 2017 Workshop on Augmented Environments for Computer-Assisted Interventions (AE-CAI). Quebec City, Canada, 2017. *

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