Faculty Scholarship 2018

Biomedical Engineering

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Vinay Abhyankar

Associate Professor
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Journal Paper

Phaneuf, CR, et al. "Ultrasensitive Multi-species Detection of CRISPR-Cas9 by a Portable Centrifugal Microfluidic Platform." Analytical Methods 11. (2018): 559-565. Print. *

Tran, N, et al. "MicroRNA Dysregulational Synergistic Network: Discovering MicroRNA Dysregulatory Modules Across Subtypes in Non-Small Cell Lung Cancers." BMC Bioinformatics 19. (2018): 504. Print. *

Invited Keynote/Presentation

Inyang, E, et al. "In Vitro Characterization of Blood Brain Barrier Permeability Post Microcavitation." Biomedical Engineering Society Annual Meeting October 2018 Atlanta, GA. BMES. Atlanta, GA. 20 Oct. 2018. Conference Presentation. £

Peer Reviewed/Juried Poster Presentation or Conference Paper

Williams, M, et al. "Rapidly Integrated Microfluidic Debubbler." Proceedings of the Biomedical Engineering Society Annual Meeting October 2018. Atlanta, GA. Ed. BMES. Atlanta, GA: n.p.. £

Ahmed, A, et al. "An Automated Process for the 
Fabrication of Aligned Collagen Substrates with Tunable Fiber Properties." Proceedings of the Biomedical Engineering Society Annual Meeting October 2018. Atlanta, GA. Ed. BMES. Atlanta, GA: n.p.. £

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Jennifer Bailey

Principal Lecturer
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Published Conference Proceedings

Bailey, Jennifer, Christine Dobie, and David Wick. "Work in Progress: Designing an Introduction to Biomedical Engineering course around a design challenge." Proceedings of the ASEE National Conference, June 2018, Salt Lake City, UT. Ed. ASEE. Salt Lake City, UT: n.p., Web. *

Bailey, Jennifer. "Exploring an Inquiry-based Learning with Peer-teaching Pedagogy in a Physiological Signals Lab Course." Proceedings of the ASEE National Conference, June 2018, Salt Lake City, UT. Ed. ASEE. Salt Lake City, UT: n.p., 2018. Web. *

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Steven Day

Professor
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Journal Paper

Sul, Bora, et al. "Assessing Airflow Sensitivity to Healthy and Diseased Lung Conditions in a Computational Fluid Dynamics Model Validated in vitro." Journal of Biomechanical Engineering 140. 5 (2018): 14. Print. *

Mix, Doran S, et al. "Manufacturing Abdominal Aorta Hydrogel Tissue-Mimicking Phantoms for Ultrasound Elastography Validation." JoVE (Journal of Visualized Experiments). 139 (2018): e57984. Web. *

Hariharan, Prasanna, et al. "Inter-laboratory characterization of the flow field in the FDA blood pump model using particle image velocimetry (PIV)." Cardiovascular Engineering and Technology 9. 4 (2018): 623-640. Print. *

Published Conference Proceedings

Prechtl, Ian R, Steven W Day, and Jason R Kolodziej. "An Acoustic Time-Frequency Approach to Condition Monitoring of Ventricular Assist Devices." Proceedings of the PHM Society Conference. Ed. ?. ?, ?: n.p., 2018. Web. *

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Thomas Gaborski

Professor
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Journal Paper

Chung, H.H., et al. "Use of Porous Membranes in Tissue Barrier and Co-culture Models." Lab on a Chip 18. (2018): 1671-1689. Print. *

Chung, H.H., et al. "Extended Live-tracking and Quantitative Characterization of Wound Healing and Cell Migration with SiR-Hoechst." Experimental Cell Research 1. 2 (2018): 198-210. Print. *

Invited Keynote/Presentation

Gaborski, T.R. "Engineering Porous Membranes to Optimize in Vitro Cellular Barrier Models." IEEE NANOMED. IEEE. Waikiki, HI. 4 Dec. 2018. Conference Presentation. *

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Blanca Lapizco-Encinas

Professor
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Journal Paper

H., Mukaibo,, et al. "Ultrathin nanoporous membranes for insulator-based dielectrophoresis (iDEP)." Nanotechnology 29. 23 (2018): 235704. Print. *

V., Perez-Gonzalez,, et al. "A simple approach to reducing particle trapping voltage in insulator-based dielectrophoretic systems." Analytical Chemistry 90. 7 (2018): 4310-4315. Print. *

D., Polniak, et al. "Separating large microscale particles by exploiting charge differences with dielectrophoresis." Journal of Chromatography A 1545. (2018): 84-92. Print. *

Journal Editor

CHIEF), Blanca H. Lapizco-Encinas (EDITOR IN, ed. ELECTROPHORESIS. GERMANY: WILEY, 2018. Web.

National/International Competition Award Winner

Hill, Nicole and Blanca H. Lapizco-Encinas. AES. TravelGrant to attend the 2018 AES Annual Meeting at Scix. Atlanta, GA, 2018. ≠

Peña, Adriana Coll de and Blanca H. Lapizco-Encinas. AES. Travel Grant to attend the 2018 AES Annual Meeting at Scix. Atlanta, GA, 2018. ≠

Invited Keynote/Presentation

B.H., Lapizco-Encinas,. "Keynote address at the Graduate Lunch: Rapid microparticle assessments with insulator based dielectrophoresis." Society of Hispanic Professional Engineers (SHPE) 2018 Convention. Society of Hispanic Professional Engineers. Cleveland, OH. 8 Nov. 2018. Keynote Speech. ≠

B.H., Lapizco-Encinas,. "Fine-tuning dielectrophoretic particle assessments." TP 2018 - 25th International Symposium on Electro- and Liquid Phase-Separation Techniques. University of Kyoto. Kyoto, Japan. 20 Aug. 2018. Keynote Speech. ≠

B.H., Lapizco-Encinas,. "Microparticle analysis with insulator based dielectrophoresis." Conference Dielectrophoresis 2018. University of Surrey. Surrey, England. 24 Jul. 2018. Keynote Speech. ≠

V.H., Perez-Gonzalez,, et al. "Lowering the required trapping voltage in insulator-based dielectrophoretic systems by post-array optimization." International Conference on Nanotechnology Tec.Nano 2018. Tec de Monterrey, Mexico. Monterrey, Mexico. 15 Nov. 2018. Conference Presentation. ≠

R.C., Gallo-Villanueva,, et al. "Computational and experimental analysis of the influence of channel design over joule heating effects in insulator-based dielectrophoretic devices." International Conference on Nanotechnology Tec.Nano 2018. Tec de Monterrey, Mexico. Monterrey, Mexico. 15 Nov. 2018. Conference Presentation. ≠

B.H., Lapizco-Encinas,. "Strategies for particle dielectrophoresis." Annual AES Meeting @ Scix. AES & Scix. Atlanta, GA. 23 Oct. 2018. Conference Presentation. ≠

A., Coll De Peña,, et al. "Insulator-based dielectrophoresis to purify and enrich bacteriophages." Annual AES Meeting @ Scix. AES & Scix. Atlanta, GA. 22 Oct. 2018. Conference Presentation. £

A., Coll De Peña,, et al. "Insulator-based dielectrophoresis to characterize the electrokinetic behavior of bacterial cells and create a library." Annual AES Meeting @ Scix. AES & Scix. Atlanta, GA. 22 Oct. 2018. Conference Presentation. ≠

N., Hill,, Polniak, D., and Lapizco-Encinas, B.H. "Particle separation using dielectrophoresis chromatography." Annual AES Meeting @ Scix. AES & Scix. Atlanta, GA. 22 Oct. 2018. Conference Presentation. ≠

N., Hill, and Lapizco-Encinas, B.H. "Assessment of correction factors employed in insulator based dielectrophoresis." Annual AES Meeting @ Scix. AES & Scix. Atlanta, GA. 22 Oct. 2018. Conference Presentation. ≠

A., Coll De Peña,, et al. "Electrokinetic Characterization of Bacteriophages using Insulator-based Dielectrophoresis." 2018 RIT Undergraduate Research Symposium. RIT. Rochester, NY. 2 Aug. 2018. Conference Presentation. ≠

C., Lentz,, Hidalgo-Caballero, S., and Lapizco-Encinas, B.H. "Low frequency AC potentials for insulator based dielectrophoresis." 2018 RIT Undergraduate Research Symposium. RIT. Rochester, NY. 2 Aug. 2018. Conference Presentation. ≠

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Cristian Linte

Associate Professor
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Full Length Book

Linte, C.A. and Peters, T.M., Yaniv, Z., Williams, J. Mixed and Augmented Reality in Medicine. 1st Edition ed. London, UK: Taylor & Francis, 2018. Print. * ≠

Journal Paper

C.A., Linte, and Camp, J.J., Rettmann, M.E., Haemmerich, D., Aktas, M.K., Huang, D.T., Packer, D.L., Holmes, III D.R. "Lesion Modeling, Characterization, and Visualization for Image-guided Cardiac Ablation Therapy Monitoring." SPIE Journal Medical Imaging. J Med Imag 5. 2 (2018): 021218-1-15. Print.

Linte, C.A. and Hasan, S.M.K. "A Modified U-Net Convolutional Network Featuring a Nearest-neighbor Re-sampling-based Elastic-Transformation for Brain Tissue Characterization and Segmentation." Proc IEEE Western NY Image & Signal Proc Workshop. (2018): DOI: 10.1109/WNYIPW.2018.8576421. Web. * ≠

Linte, C.A. and Jalalahmadi, G., Helguera, A., Mix, D. "Modeling the effects of regional material properties on the wall stress distribution of abdominal aortic aneurysms." Proc SPIE Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 10578. (2018): 105780I-1—14. Print. * ≠

Linte, C.A. and Dangi, S., Yaniv, Z.R. "Cine cardiac MRI slice misalignment correction towards full 3D left ventricle segmentation." Proc. SPIE Medical Imaging: Image-guided Procedures, Robotic Interventions and Modeling 10576. (2018): 1057607-1—13. Print. * ≠

Linte, C.A. and Jalalahmadi, G., Helguera, M., Hodis, S., Mix, D. "(Peak) Wall Stress as an Indicator of Abdominal Aortic Aneurysm Severity." Proc IEEE Western NY Image & Signal Proc Workshop. (2018): 1-5. Print. * ≠

Linte, C.A. and Liu, D., Peck, I., Schwarz, K.Q. "Left Ventricular Ejection Fraction: Comparison between True Volume-based Measurements and Area-based Estimates." Proc IEEE Western NY Image & Signal Proc Workshop. (2018): 1-5. Print. * ≠

Book Chapter

Linte, C.A. and Peters, T.M., Sacks, M.S. "Augmented and Virtual Visualization for Image-Guided Cardiac Therapeutics." Mixed and Augmented Reality in Medicine. London, United Kingdom: Taylor & Francis, 2018. 231-249. Print. * ≠

National/International Competition Award Winner

Linte, C.A. IEEE Region 1 Award. Outstanding Teacher / Scientist in an IEEE Area of Interest Award in Biomedical Engineering, Medical Image Computing and Computer-assisted Therapy. Albany, NY, 2018. ≠

Peer Reviewed/Juried Poster Presentation or Conference Paper

Upendra, R.R. "Pre-trained Deep Learning Algorithms for Detection and Classification of Diabetic Retinopathy: Review and Side-by-Side Comparison." Proceedings of the IEEE Western NY Image & Signal Proc Workshop. Ed. Ptucha, R. Rochester, NY: n.p.. ≠

Invited Keynote/Presentation

C.A., Linte,. "Medical Imaging and Visualization: Enabling Computer-assisted Diagnosis and Therapy." Minisymposium on Imaging, Modeling, Visualization and Biomedical Computing. Society of Industrial and Applied Mathematics (SIAM) – Imaging Science Symposium. Bologna, Italy. 6 Jun. 2018. Keynote Speech. ≠

Linte, C.A. "Medical Imaging and Visualization: Enabling Computer-assisted Diagnosis and Therapy." Minisymposium on Imaging, Modeling, Visualization and Biomedical Computing. Society of Industrial and Applied Mathematics (SIAM) – Imaging Science Symposium. Bologna, Italy. 6 Jun. 2018. Keynote Speech. ≠

Linte, C.A. "Biomechanical reconstruction and visualization of myocardial active stresses for cardiac viability assessment." Biomechanics Days. Bulgarian Academy of Sciences. Sofia, Bulgaria. 31-1 Oct. 2018. Keynote Speech. ≠

Linte, C.A. "Automatic reconstruction of long-limb standing panoramas from multiple X-ray image sectors." Biomechanics Days. Bulgarian Academy of Sciences. Sofia, Bulgaria. 31-1 Oct. 2018. Keynote Speech. ≠

Linte, C.A. "Wall stress as a biomarker for abdominal aortic aneurysm severity and rupture." Biomechanics Days. Bulgarian Academy of Sciences. Sofia, Bulgaria. 31-1 Oct. 2018. Keynote Speech. ≠

Hasan, S.M.K. "Modified U-Net Convolutional Network Featuring a Nearest-neighbor Re-sampling-based Elastic-Transformation for Brain Tissue Characterization and Segmentation." IEEE Western NY Image & Signal Proc Workshop. IEEE Rochester NY Section. Rochester, NY. 5 Oct. 2018. Keynote Speech. ≠

Jalalahmadi, G. "(Peak) Wall Stress as an Indicator of Abdominal Aortic Aneurysm." IEEE Western NY Image & Signal Proc Workshop. IEEE Rochester NY Section. Rochester, NY. 5 Oct. 2018. Keynote Speech. ≠

Liu, D. "Left Ventricular Ejection Fraction: Comparison between True Volume-based Measurements and Area-based Estimates." IEEE Western NY Image & Signal Proc Workshop. IEEE Rochester NY Section. Rochester, NY. 5 Oct. 2018. Keynote Speech. ≠

Linte, C.A. "Background Lung Tissue Deformation Correction and Ground Glass Nodule Tracking using A Feature-based Affine Registration." Computer Assisted Radiology and Surgery. International Foundation of Computer-assisted radiology and Surgery (IFCARS). Berlin, Germany. 19-23 Jun. 2018. Keynote Speech. ≠

Jalalahmadi, G. "Toward modeling the effects of regional material properties on the wall stress distribution of abdominal aortic aneurysms." SPIE Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE. Houston, TX. 10-15 Feb. 2018. Keynote Speech. ≠

Dangi, S. "Cine cardiac MRI slice misalignment correction towards full 3D left ventricle segmentation." SPIE Medical Imaging: Image-guided Procedures, Robotic Interventions and Modeling. SPIE. Houston, TX. 10-15 Feb. 2018. Keynote Speech. ≠

Linte, C.A. "Assessment of visualization and interaction paradigms for medical imaging visualization, simulation and training." SPIE Medical Imaging: Imaging Informatics for Healthcare, Research, and Applications. SPIE. Houston, TX. 10-15 Feb. 2018. Keynote Speech. ≠

Linte, C.A. "From medical image computing to computer-aided diagnosis tools: Successes, Challenges, Guidelines and Lessons Learned." Computer methods in Biomechanics and Biomedical Engineering (CMBBE). CMBBE: Imaging & Visualization. Libson, Portugal. 26 Mar. 2018. Keynote Speech. ≠

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Michael Richards

Assistant Professor
Biomedical Engineering
Kate Gleason College of Engineering

2018 Submissions

Journal Paper

Mix, Doran, et al. "Manufacturing Abdominal Aorta Hydrogel Tissue-Mimicking Phantoms for Ultrasound Elastography Validation." Journal of Visualized Experiements. 139 (2018): NA. Web. *

Published Conference Proceedings

Jalalahmadi, Golnaz, et al. "(Peak) Wall Stress As An Indicator Of Abdominal Aortic Aneurysm Severity." Proceedings of the IEEE Western New York Image and Signal Processing Workshop. Ed. . Rochester, New York: n.p., 2018. Print.

Kelly, Meghan, et al. "Novel Physical Therapy Protocol Targeting Insertional Achilles Tendinopathy Improves Patient Reported Outcomes that Persist For 1 Year." Proceedings of the American Orthopaedic Foot & Ankle Society Annual Meeting. Ed. . Rosemont, IL: n.p., 2018. Print.

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