Gregory Babbitt

Associate Professor

College of Science

Thomas H. Gosnell School of Life Sciences

2019 Submissions

Published Game, Application or Software

GA, Babbitt. DROIDS 3.0 - software for comparative protein dynamics. Software. https://github.com/gbabbitt/DROIDS-3.0-comparative-protein-dynamics. 2019.

2018 Submissions

Journal Paper

G.A., Babbitt, et al. "DROIDS 1.2 – a GUI-based Pipeline for GPU-accelerated Comparative Protein Dynamics." BIOPHYSICAL JOURNAL 114. (2018): 1009-1017. Print. *

G.A., Babbitt, et al. "Triplet codon organization optimizes the impact of synonymous mutation on nucleic acid molecular dynamics." JOURNAL OF MOLECULAR EVOLUTION 86. (2018): 91-102. Print. *

E.G, Ryen, et al. "Ecological Foraging Models as Inspiration for Optimized Recycling Systems in the Circular Economy." RESOURCES CONSERVATION AND RECYCLING. 135 (2018): 48-57. Print. *

2017 Submissions

Journal Paper

Ryen, E.G., et al. "Ecological Foraging Models as Inspiration for Optimized Recycling Systems in the Circular Economy." Resources, Conservation & Recycling. (2017): 1-10. Web. *

Babbitt, G.A., et al. "Triplet-Based Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics." Journal of Molecular Evolution. (2018): 1-12. Web. *

Published Game, Application or Software

Babbitt, G.A., et al. DROIDS 1.2 - Free Software Project for Comparative Protein Dynamics. Software. GitHub. 2017.

Peer Reviewed/Juried Poster Presentation or Conference Paper

Babbitt, G.A. "Triplet Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics." Proceedings of the Society for Molecular Biology and Evolution. Ed. SMBE. Austin, TX: SMBE. £

2016 Submissions

Journal Paper

GA, Babbitt. "Can all heritable biology really be reduced to a single dimension?" GENE 578. 2 (2016): 162-168. Print. *

2014 Submissions

Journal Paper

GA, Babbitt. "Synonymous codon bias and functional constraint on GC3-related DNA backbone dynamics in the prokaryotic nucleoid." NUCLEIC ACIDS RESEARCH 42. 17 (2014): 10915-10926. Print. *

2012 Submissions

Journal Paper

GA, Babbitt. "Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescales." GENOME BIOLOGY AND EVOLUTION 5. 4 (2012): 954-965. Web. *

2011 Submissions

Journal Paper

GA, Babbitt. "Functional conservation of nucleosome formation selectively biases presumably neutral molecular variation in yeast genomes." GENOME BIOLOGY AND EVOLUTION 3. (2011): 15-22. Web. *

Invited Article/Publication

GA, Babbitt. "Chromatin Evolving." American Scientist - cover story. (2011). Print. ∆

2010 Submissions

Published Article

Kim Y., J.H. Lee, and G.A. Babbitt. “The enrichment of TATA box and the scarcity of depleted-proximal-nucleosome in the promoters of duplicated yeast genes.” Journal of Molecular Evolution, 70.1 (2010): 69-73. Print. «

Babbitt, G.A., M.Y. Tolstorukov, and Y. Kim. “The molecular evolution of nucleosome positioning through sequence-dependent deformation of the DNA polymer. Special issue - current perspective in nucleosome positioning.” Journal of Biomolecular Structure and Dynamics, 27.6 (2010): 765-780. Print. «

Babbitt, G.A. “Relaxed Selection Against Accidental Blinding of Transcription Factors with Conserved Chromatin Contexts.” GENE, 466 (2010): 43-48. Print.

Babbitt G.A. and C.R. Cotter. “Functional conservation of nucleosome formation selectively biases presumably neutral molecular variation in yeast genomes.” Genome Biology and Evolution, (2010): n.p. Web.